rs46425347 SNP Detail

Summary

• ID
  rs46425347
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88484470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTACTTA ACTTCCTCTT
  GCCTCAGTTT CCTCAAAGCA AAGAGGTTCC AACAGGTTCG TTCAGAGTGG AGAAAGCAAA
  ACCAAAGGGC CACCACCTAT AGGTGTCTCC TCCCAGCCTT CCCCCGCAGG CCTTGAGGGA
  CACTAAGCCC TTTCTGTGTT CATAAACCTG TCTGAGGGAA CATTCTAGAA TGCTGCAAGG
  R
  TCAGCTTGTC AGGGAGCTCT CCCCGCCCCT CCCTGGCTCC GGGAGACAGG AGGCAATTCC
  AGACAAGCTG AGCAGGAGAG GAAGGCCAAG GGATCTTCCT CTCTCTGGAG GATCCTCTCC
  TCTCTAGGGG GTTCCTCCGG GGCCCTGGGT CTACCATCAT GATGCTAGCT CTTGAGCAGG
  TCTGAGGACT CTCAAAATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss63579241	NES17028512	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46425347					SNP	A	A	A	A	A	A	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579241	NES17028512	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88484470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	320 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	13 bp upstream
Tssr135809	transcription start site region 135809	54 bp upstream
Zdhhc25	zinc finger, DHHC domain containing 25	35 bp upstream