rs46426540 SNP Detail

Summary

• ID
  rs46426540
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30840764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGGCAGGA TGGGGTAGGG ACACCCAGTG GTCACCACCG
  TGGGGAAGAG CCTCCTGGAG GTGATGGGAG AGAAAACCTT CCCCATGCCT GAGGCAGAAG
  S
  AATGCTCAGT GCCTTTCCTA GCCCTTTTTG ATGTCAGGGA TGGCTAACTC TTCCAGCTCT
  GGGCTGACAA ACACAAAGGG GAGTCTGCTG TCAGGTCAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148700691	ENSMUSSNP3178327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss322139659	CHEV_7_31926358	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46426540					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30840764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18838	CpG island 18838	1348 bp proximal
Gramd1a	GRAM domain containing 1A	within coordinates
Rr645030	regulatory region 645030	1079 bp distal
Rr645031	regulatory region 645031	734 bp distal
Tssr71945	transcription start site region 71945	1288 bp downstream