rs46428055 SNP Detail

Summary

• ID
  rs46428055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:37088203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACTGAAA GGCTTAGAAC
  AGATGAGCAA ACTGAGCAGG AACGGGCTGC TCCAGGAAGC ATCACATCTC AAGGCCATGC
  ACATTCGAGT CCTGTCGCCA ACTCAGCCCT TTGTCTCCGA CATGGCTTGT CCCAGGTTTA
  CACAGGCAGC AGGTGGCTGA TACTCTACAG CCAATAGTGC AAGAATCACT ACAGCCTCCA
  Y
  ACCAGACTTC TGGCCTTTGT GAGTACAGTT GCAAACAATG CAGAAGGAAC AGGAAAGAGG
  AATAAGAGAA GTCACGAAGT TCGATGCAGT CTCTGGTTAG TACACCTGTA AAAATTCCAA
  ATCTCCTTGA CACCCCTCTC TCCAACCCAC TTCCTAGCCA CGAGTCTTAC ATACAGAAGC
  AATACAGATT GCTTCCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61379702	NES16766897	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46428055					SNP	C	C	C	C	T	C	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61379702	NES16766897	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:37088203 () rs orientation: forward

Symbol	Name	Function Class
Gm67648	predicted gene, 67648	within coordinates
Rr401317	regulatory region 401317	180 bp upstream
Rr676635	regulatory region 676635	487 bp distal
Rr676636	regulatory region 676636	70 bp proximal
Rr676637	regulatory region 676637	352 bp proximal
Rr676638	regulatory region 676638	497 bp proximal
Rr676639	regulatory region 676639	1673 bp proximal