rs46428836 SNP Detail

Summary

• ID
  rs46428836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54415139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAGACAT CATTCGAGAA
  GAGACTCTAG CTAACTGCCA ATACTGTTTG GACTTTAAAA TGAAGTATAT CTATAAAATG
  ATGTCAACAG TTTATTTCGT GGCTCATAAA CTGACTCTCA GAGAGAATCC TAAGAAGAAT
  ATTTTTCAGA GTTCAAGCAA GCGCTTAAGT GTTTGAGTCT TAGGACATTG ACTAAATCAT
  Y
  CTCTTGATGA ACACATGGGA CAGTAGCATG AAATTGAGGG AGTTTTGCAA ACTCAAACTC
  GACATAAAAA TAAAGGCTTT CTATATAGAT GGAGATATGA CACCAACTAA ATTCCTTTTG
  AAAAGACATG ACATTAAGTC CTCTCAATGA AAAAAGTACT ATCATGTTCT AGCTCTCAAT
  ATTAACTTTT AGCAATGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62393380	NES17236603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46428836					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62393380	NES17236603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54415139 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492148	regulatory region 492148	943 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj40	T cell receptor alpha joining 40	239 bp upstream
Traj41	T cell receptor alpha joining 41	1357 bp downstream
Traj42	T cell receptor alpha joining 42	1846 bp downstream
Tssr125566	transcription start site region 125566	1700 bp downstream
Tssr125567	transcription start site region 125567	1463 bp downstream
Tssr125568	transcription start site region 125568	1446 bp downstream
Tssr125569	transcription start site region 125569	1426 bp downstream
Tssr125570	transcription start site region 125570	1397 bp downstream
Tssr125571	transcription start site region 125571	1842 bp upstream
Tssr125572	transcription start site region 125572	1965 bp upstream
Tssr128543	transcription start site region 128543	1020 bp upstream