rs46435680 SNP Detail

Summary

• ID
  rs46435680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59524772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCCAGAA GAAAGGTCCC
  CAGAAGGCCC TGTAGTCATT GGCTGGCTCC TGGACTGTGG TGTTCTTGCC TCCTGGTCAC
  CCTGTCAGTG TCTGGATCTC ACAGGAGCCA CCTGCACTTA GGTCTTAGGC TTATGCTGGG
  GAAACTGCTG TAGGGACAAG TCCTACCAAG AAACCAGGTG CACCCTATTC TAATCTGTAG
  Y
  CTCTCTTGGC TACCAGACAC CAGCAACTTA CACAAAACTT ACATAAGCCT GGGACCCCAA
  GCAAGAGCCC TTTGCTAGTA TGTGGAAGAA ATGGCTGCAT AAATGGCCAG AGGAATTGGG
  TTATAGTCCT CCTAGAGACA GCCAGGGAGC CCTAACGTGG ATCCTCAAAG CCTTACATGC
  TAGGCAGCCC ACAAGTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132238165	ENSMUSSNP6579776	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46435680					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59524772 () rs orientation: forward

Symbol	Name	Function Class
A630028G03Rik	RIKEN cDNA A630028G03 gene	within coordinates
Gm33998	predicted gene, 33998	1833 bp downstream
Rr448217	regulatory region 448217	452 bp distal
Rr448218	regulatory region 448218	708 bp distal
Tssr101856	transcription start site region 101856	248 bp upstream