rs46435929 SNP Detail

Summary

• ID
  rs46435929
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130972178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTATGTCA GCTGTAGTTC
  ACTTCAGCAC GCACTGATTT TGTTCTTGAG TGATGACTAC AGTTTGAACA CATCTTTTAT
  GAATAAAAAG TACCATAAAA GCTTATTTTT CTTATACCAC ACCCCTCTCA CACATTTTTA
  TTTGGTAGTT CTCTGAGGTC TGTCAGTCTG TGTTTTTAGG AAGGGTAAAG AGTTTGACAC
  M
  GTCTCCTGTA GCACAGGCTT GCCTCAAACT CTTGCTCCTC CTGTGTGCTG CTATGCTCCT
  ATGCGCAGCT CCTTTCTGAG TGCTGGGATC ATACCCCAAC TCCAAGCTCG CTAATATTTA
  CAAAAAAAAA AAATTCTATA ATCCGAGTTT TCTGCCAGCA TGTATTGGGG ATAAGGATGT
  GCATTTCCGG TCCTATTTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61067230	NES16057235	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs46435929					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61067230	NES16057235	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130972178 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19815	CpG island 19815	475 bp proximal
Gm73326	predicted gene, 73326	1107 bp downstream
Pstk	phosphoseryl-tRNA kinase	665 bp upstream
Rr400669	regulatory region 400669	519 bp upstream
Rr656446	regulatory region 656446	256 bp proximal
Rr656447	regulatory region 656447	641 bp proximal
Rr656448	regulatory region 656448	1574 bp proximal
Tssr69565	transcription start site region 69565	689 bp upstream
Tssr69566	transcription start site region 69566	746 bp upstream