rs46436319 SNP Detail

Summary

• ID
  rs46436319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72887480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGCTTTG AGTGTTTGTG
  TGCACACAGT TGGCTCTATG AGAGTGATTC TCAATGGCAG GTGGCTGCCT GCCTTGCAGT
  CCCTTGCCAG CTGTGCCCCA GCCCAGGGAT CTTGTGGTAG TAGTTTTTTA AACCTCAACT
  AGTCTGCCAT GATCGGACCA TAAAGGAAGG ACTTAAACTT GGGGTTAGTG GAGAGTGAGC
  R
  CGATATTTTC TGATGGATCC AGGGATGACC TACTCCCCTG TTGAGGGCCT TGTGTCTGTC
  TTCATCCTTT GGTTGCAGCT TGGAGGGTGA GGGAAGAACT GAGCTTGGAT CTCCCCATTT
  CTCTCTGCAG TCACACAGCC TGAGTTCAAC TCCTGATCCA TCCATCACTT AACAGGCCTG
  TGATCTCGCT CAAGCGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60750566	NES16381684	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	A	A	A	A		A	A	A	G
ss144663626	ENSMUSSNP3066198	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46436319					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750566	NES16381684	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72887480 () rs orientation: forward

Symbol	Name	Function Class
Igfbp2	insulin-like growth factor binding protein 2	within coordinates
Tssr7321	transcription start site region 7321	758 bp upstream
Tssr7322	transcription start site region 7322	787 bp upstream
Tssr7323	transcription start site region 7323	830 bp upstream
Tssr7324	transcription start site region 7324	879 bp upstream
Tssr7325	transcription start site region 7325	894 bp upstream
Tssr7326	transcription start site region 7326	924 bp upstream
Tssr7327	transcription start site region 7327	953 bp upstream
Tssr7328	transcription start site region 7328	1256 bp upstream
Tssr7329	transcription start site region 7329	1291 bp upstream
Tssr7330	transcription start site region 7330	1305 bp upstream
Tssr12178	transcription start site region 12178	794 bp downstream
Tssr12179	transcription start site region 12179	837 bp downstream
Tssr12180	transcription start site region 12180	901 bp downstream
Tssr12181	transcription start site region 12181	922 bp downstream
Tssr12182	transcription start site region 12182	965 bp downstream
Tssr12183	transcription start site region 12183	986 bp downstream