rs46438117 SNP Detail

Summary

• ID
  rs46438117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145432 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACC CTCTGTTGAG ACTTTCATGC
  R
  TGGAACTGGG CAGCCTGAAC CACCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132326611	ENSMUSSNP6730580	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323719232	CHEV_11_67068108	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46438117					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145432 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	127 bp upstream
Tssr3529	transcription start site region 3529	183 bp upstream
Tssr102201	transcription start site region 102201	1088 bp downstream
Tssr102202	transcription start site region 102202	599 bp downstream
Tssr102203	transcription start site region 102203	536 bp downstream
Tssr102204	transcription start site region 102204	140 bp downstream
Tssr102205	transcription start site region 102205	67 bp upstream
Tssr102206	transcription start site region 102206	171 bp upstream
Tssr102207	transcription start site region 102207	815 bp upstream
Tssr102208	transcription start site region 102208	985 bp upstream
Tssr102209	transcription start site region 102209	1020 bp upstream
Tssr102210	transcription start site region 102210	1038 bp upstream
Tssr102211	transcription start site region 102211	1048 bp upstream
Tssr102212	transcription start site region 102212	1070 bp upstream
Tssr102213	transcription start site region 102213	1222 bp upstream
Tssr102214	transcription start site region 102214	1578 bp upstream
Tssr102215	transcription start site region 102215	1592 bp upstream
Tssr102216	transcription start site region 102216	1636 bp upstream
Tssr102217	transcription start site region 102217	1790 bp upstream
Tssr108535	transcription start site region 108535	1896 bp upstream
Tssr108536	transcription start site region 108536	552 bp upstream
Tssr108537	transcription start site region 108537	531 bp upstream
Tssr108538	transcription start site region 108538	21 bp upstream
Tssr108539	transcription start site region 108539	160 bp downstream
Tssr108540	transcription start site region 108540	220 bp downstream
Tssr108541	transcription start site region 108541	829 bp downstream
Tssr108542	transcription start site region 108542	990 bp downstream
Tssr108543	transcription start site region 108543	1105 bp downstream
Tssr108544	transcription start site region 108544	1688 bp downstream