rs46438618 SNP Detail

Summary

• ID
  rs46438618
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:139409928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGATTTATT TTATTTCTGT
  TCTTTTGGAC ACATTGAGGA CAGTGAGCAT CTATCTGTTT TCAACAAATC CTGCATAGCT
  TAGTTTTAGA CTTCTGACTG GGCTGTGCTG TGGCACAGCA TGTGTGATAA AGTGGTTACC
  ACACAGACAC TGTTGTAATT ACATAGTTGT CAGAAGGCTC TCGGTCAGTC TGGTAGAGCA
  K
  AAACCAACTT GACATTTACA ATTAATGCTT TGTGTCCATT AATTGCATAT TAACTATTAC
  AATTAGTATA ACAATAATTG CATAAGATCT TTCTCATTTG CAATTGTAGA CCATTATTGT
  AACCTTATAT TTCTATGCTT GATATAGGCT GGATGTAGAA AATATAAAGC TAAGAAATAC
  TTATCCAAAG TGGAAGCTGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60809598	NES16481649	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46438618					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60809598	NES16481649	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:139409928 () rs orientation: forward

Symbol	Name	Function Class
Aspm	abnormal spindle microtubule assembly	within coordinates
Tssr235	transcription start site region 235	1332 bp upstream