rs46438736 SNP Detail

Summary

• ID
  rs46438736
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45318113 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAGCCCT TTAGCTTAGC
  CTTCCCCAGA AGGCTTAGGG TCACAAGAAA AGCCCAGCGT TTTGAAATCC ACAGACTCAG
  GCCTGGAGCC CAAGAGGACC CCTGCCGGTC CATAGATGTT GAGTTTTCTG ACCTAGAACA
  CTGGTGGAAG AGGGACTCAT TAAATGCTTC CTGAAAGGGA AATGGGGGTG GGGTGGGGTT
  T
  GGGGTCCTGT CTTGGATCTG GCTGAGGCTG ATGCTAGCTC CCCATTTGAC CTTGAACATG
  ACGGAAGTGT GGGAAGACTT TCTGCATGGA TGCAGAGCCT GGGTCACTGT GGCTTCTCCT
  TAGATTTTGA CCTTTCTGAA CAACCCATAC CTGAGGTTCA CCAGCACTGA CCCCCTCTGG
  CTACTGGAGG GATCTGGACT                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136411288	ENSMUSSNP4934645	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46438736					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45318113 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21691	CpG island 21691	1321 bp proximal
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	1385 bp distal
Rr677906	regulatory region 677906	617 bp distal
Rr677907	regulatory region 677907	1392 bp proximal
Rr677908	regulatory region 677908	1688 bp proximal
Tssr84790	transcription start site region 84790	806 bp downstream
Tssr84791	transcription start site region 84791	706 bp downstream
Tssr84792	transcription start site region 84792	697 bp downstream
Tssr84793	transcription start site region 84793	304 bp upstream
Tssr84794	transcription start site region 84794	1453 bp upstream