rs46439221 SNP Detail

Summary

• ID
  rs46439221
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72155599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATATTAGT GAACCATAAA
  AATGATTGAA GAGGCCCTGC TGTTGAGTGA CAGCAGCTAG TACAAACGTC CCACCTGTGT
  CACACGGCAG AAAAATCCAC AGACAAGGAG CAGGTCAGGG GCGGGAGGGA TGATCTTGTG
  GGGGCAACCA TGTTCTGGCA ATGCAGCAGG TAAGGCTGCC GGGGGCCATG TTAACTGCCA
  M
  TCACTCCAGC TCCCTGCCAC AGAAAACACC TCTTCTGGCT CCTGCTCAGA ATGCAGGTGA
  CTCAGCCTGG ACCTGCCTGA CAAATGTTCA CTCACTGCAT AGTTGAGGTT TTGGAGTCAC
  TTCGGTGAAA ACGGCAATGG CATTATAAAC AGGCAAGGAC ACCCCACCCA AGGCTCTGCC
  CCAGCTGCTG GGACTCACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60630720	NES16282517	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46439221					SNP	C	A	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60630720	NES16282517	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72155599 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	1166 bp upstream
Cpgi20570	CpG island 20570	1119 bp distal
Gm18860	predicted gene, 18860	1250 bp downstream
Rr382258	regulatory region 382258	1608 bp downstream
Rr665157	regulatory region 665157	1177 bp distal
Rr665158	regulatory region 665158	676 bp distal
Rr665159	regulatory region 665159	963 bp distal
Rr665160	regulatory region 665160	745 bp distal
Rr665161	regulatory region 665161	324 bp proximal
Rr665162	regulatory region 665162	325 bp proximal
Tssr81749	transcription start site region 81749	1201 bp upstream
Tssr81750	transcription start site region 81750	1171 bp upstream
Tssr81751	transcription start site region 81751	1114 bp upstream
Tssr81752	transcription start site region 81752	321 bp upstream