rs46439946 SNP Detail

Summary

• ID
  rs46439946
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:95941168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTCAAAA GGAGTGACGA
  TTTCTCCCTC AGGGAAGGCA GTCAGCAGAA ATAGTCTGGT GATGGGAAAT GAGCGTCCCC
  ATCGGCCAGC TGCTGCTTCG CTTTACGCTT TACTCCTGTG TGGCCTTTGA AAGTTCCTTC
  AGCAATCTGA GTACTGTCTC AGGGTTGAAC GAAATGGTCC ATACAAGCCG CTTGACTCCA
  Y
  GCCACTTATT CATTCACCCA TCAAAGTCCG ATCCCGTGCT TACCTAGCAT GCCCCTGCTG
  TAGGCCCTGA GTGTAGGATT CGTCAAGACA GGACTGTAGT TCCTAAGGGA CTTTAGCCTA
  CTGAGGGCTC CACACAGGCC CTATGACCTT ATACCACAGA GCCACCAGGT CTCAGGATGA
  GAAGGTTCTC CCAGGGAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144996018	ENSMUSSNP3241595	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs46439946					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:95941168 () rs orientation: forward

Symbol	Name	Function Class
Iqgap2	IQ motif containing GTPase activating protein 2	within coordinates
Rr277718	regulatory region 277718	within coordinates
Rr285448	regulatory region 285448	833 bp proximal