rs46440200 SNP Detail

Summary

• ID
  rs46440200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95395608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAACTTCTGT ATGGTAAATG TACTTGCTTC TGTGACTCCG
  TCTCCTGAGC CTACTCCTAC TCTCAGAGTT CATTCTTTCT TTCAGTTCCC TCCCCTACTG
  Y
  TCCTTTCTTC AGTGTCAGTT ATATACAGGG TTACTTTGCA ATCTCCTTAT TCCCAAGTTT
  TACACTGTAC AGCCTTATGT CTGTCTCTGT AAGTCACAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136828925	ENSMUSSNP5919125	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323100858	CHEV_9_95413974	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46440200					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95395608 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22151	CpG island 22151	963 bp distal
Gm28424	predicted gene 28424	within coordinates
Rr206888	regulatory region 206888	407 bp distal
Rr383784	regulatory region 383784	22 bp downstream
Tssr90919	transcription start site region 90919	1663 bp upstream
Tssr90920	transcription start site region 90920	1647 bp upstream
U2surp	U2 snRNP-associated SURP domain containing	1559 bp upstream