rs46441836 SNP Detail

Summary

• ID
  rs46441836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11451138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACCATCC TGCCTTTGGG
  AATCTGGCTT TTTTCTTACA TTTTGTCTGT TGGGTCCTCC CTCCTCTCTC TCTCTCTCTC
  TCCCTTGCAG TTGATATACA ACACTGGGTT GTTCCCATCC TGGAGTTTTA TACTGGCTTC
  CCTGATGACA TCACTGAATG GTGCTGCGGC TCACCCCTCC CGTTTTCATT TTCCTTAAGC
  R
  GATACTTGAG CCTAGATGTG TAAGATTGGT TTCGTGTCAC TGATGGTGTG ATTCTGGTTG
  GACTGTTTCC TGTCAGCTCT CCTGCAAACT CTGCTGTCTC TTTATTCATC CATCTCTTGT
  TACTCCCTAG GCCGGTTATT CTGTGTCTCC ATCAGGTTAG TGGTTCCTCT TCTTGATGCT
  TCTGTAGTGC TGTGAATAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52596351	NES15695618	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46441836					SNP	G	G	G	G	G	A	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52596351	NES15695618	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11451138 () rs orientation: forward

Symbol	Name	Function Class
Gm59955	predicted gene, 59955	99 bp upstream
Snx29	sorting nexin 29	within coordinates
Tssr137107	transcription start site region 137107	1189 bp downstream
Tssr140027	transcription start site region 140027	97 bp upstream