rs46442396 SNP Detail

Summary

• ID
  rs46442396
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:81016158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCTGTTG ACAGTTGCCC
  TCCCTCTAGA ACCATTCTGA TGATGGGCCG CTACGTGGAG CCGATTGAGG ACGTGCCATG
  TGGAAACATT GTGGGGCTGG TCGGAGTGGA CCAGTTCCTT GTGAAGACGG GGACCATCAC
  TACCTTTGAG CACGCTCACA ACATGCGCGT GATGAAGTTC AGCGTCAGCC CTGTCGTCCG
  K
  GTGGCAGTGG AGGCCAAGAA CCCAGCTGAC CTGCCCAAGC TGGTGGAGGG GCTGAAGCGG
  CTGGCTAAGT CTGACCCTAT GGTGCAGGTG TGCCACTAGG TCTTGGCTTA TTGTGGTTGG
  AGAGGGGGAA CACCTGGCAA AAGCAGGGGA GGGCTGAGGC TAGGCCTGTA TTGGCTGTTG
  TCATAGGGCT GAGCCCTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52388457	NES15267105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46442396					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388457	NES15267105	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81016158 () rs orientation: forward

Symbol	Name	Function Class
Eef2	eukaryotic translation elongation factor 2	Coding-Synonymous
Rr435545	regulatory region 435545	628 bp distal
Rr435546	regulatory region 435546	136 bp distal
Snord37	small nucleolar RNA, C/D box 37	1311 bp downstream
Tssr94699	transcription start site region 94699	1119 bp downstream
Tssr94700	transcription start site region 94700	975 bp downstream
Tssr94701	transcription start site region 94701	906 bp downstream
Tssr94702	transcription start site region 94702	741 bp downstream
Tssr94703	transcription start site region 94703	676 bp downstream
Tssr94704	transcription start site region 94704	650 bp downstream
Tssr94705	transcription start site region 94705	585 bp downstream
Tssr94706	transcription start site region 94706	417 bp downstream
Tssr94707	transcription start site region 94707	362 bp downstream
Tssr94708	transcription start site region 94708	306 bp downstream
Tssr94709	transcription start site region 94709	48 bp downstream
Tssr98570	transcription start site region 98570	911 bp upstream
Tssr98571	transcription start site region 98571	545 bp upstream