rs46443183 SNP Detail

Summary

• ID
  rs46443183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78634480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGATT GTCCTGGGAA GTGAGCCTCT
  Y
  TCTGCCTTAG CTTGAGGCTA GCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144751864	ENSMUSSNP6736320	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss319804031	CHEV_1_78653338	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46443183					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78634480 () rs orientation: forward

Symbol	Name	Function Class
Acsl3	acyl-CoA synthetase long-chain family member 3	1120 bp upstream
Cpgi461	CpG island 461	731 bp proximal
Rr17618	regulatory region 17618	within coordinates
Rr29694	regulatory region 29694	320 bp proximal
Rr371565	regulatory region 371565	1063 bp downstream
Rr396121	regulatory region 396121	934 bp upstream
Tssr7581	transcription start site region 7581	1093 bp upstream
Tssr7582	transcription start site region 7582	1111 bp upstream
Tssr12428	transcription start site region 12428	1510 bp downstream
Tssr12429	transcription start site region 12429	1527 bp downstream
Utp14b	UTP14B small subunit processome component	1120 bp upstream