rs46443587 SNP Detail

Summary

• ID
  rs46443587
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:89587637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGATTTCA GTAAAGTCTT
  CAGCTAGTGG CAGAACGTTC TCCAGGTTAG CAGTTGGCAC TTTTTGGGCT AGTTTTATGA
  GATGGCTGGA AGTTAAAAAT GAATTTATTA GCTAACTCAT ATTCTTAGTG TCCTGGTTTT
  TACCATAGAC ATACTACTGA GAGGGATAAT GTGGTATTCA GTGTTACCAG ATGGATGGAA
  Y
  ATACCTGCCA TGTGGCCTGT GCTTTATAAT AAAGTTATAA TATCACAGAT TAAATCATCC
  CCAGTGAAGA TTTTCAAATA TTCAGCATTG AGACATAGTG TCTTTTCTGG CCAAATTTTC
  ATATATGTTA GACTAAAAGC AGTGTACAAT GCCAGAGTTA TGCTAGTGCG GCATCTCATT
  GTCTTTTAAG GTGTTTTATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss61194586	NES16707678	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs46443587					SNP	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61194586	NES16707678	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:89587637 () rs orientation: forward

Symbol	Name	Function Class
Gc	vitamin D binding protein	within coordinates
Gm72766	predicted gene, 72766	within coordinates
Tssr47069	transcription start site region 47069	1413 bp upstream
Tssr51708	transcription start site region 51708	1504 bp upstream
Tssr51709	transcription start site region 51709	1323 bp upstream
Tssr51710	transcription start site region 51710	132 bp upstream
Tssr51711	transcription start site region 51711	1485 bp downstream
Tssr51712	transcription start site region 51712	1817 bp downstream
Tssr51713	transcription start site region 51713	1836 bp downstream
Tssr51714	transcription start site region 51714	1857 bp downstream
Tssr51715	transcription start site region 51715	1874 bp downstream
Tssr51716	transcription start site region 51716	1893 bp downstream