rs46444003 SNP Detail

Summary

• ID
  rs46444003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72900966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTGCTTG TCACCCTGGA
  GAATCAAGTC TTTCCAGTGT TGGGGGTGCG TACTGACTTC TTAAAAAAAT CTTTAACAAG
  AGTAAAATTT GCACACATTC TGAGTTCACT TGTCTGCTGG GGGAAAACCT ATCTTCAATC
  ACTCACTTTT GTTTATTTTC AGAGGGATGG AATGCATTTT AGTCTTTGTA AATTTGGGGA
  Y
  GAAATCACCC TGCACTTGGG TAAGAGGAGA GGAGGGTGAG GGGTCTAGCC ATCCACACTG
  CTGGCTGCAG GAGGGGACAG ACCCGAGAGG CACTGACACA CCTTGTTTCT TTTCTCCCCT
  TGACCAATCT AAACTGGGTG TCACTGAATG CCACACTTTT TCTGACCCCA GGCTAGAGCT
  GAAAGCAAAA GGGCAGATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60750499	NES16391816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs46444003					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60750499	NES16391816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72900966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	558 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Rr34508	regulatory region 34508	1767 bp distal
Rr34509	regulatory region 34509	35 bp proximal
Tssr7342	transcription start site region 7342	557 bp upstream
Tssr12189	transcription start site region 12189	1994 bp upstream
Tssr12190	transcription start site region 12190	1498 bp upstream
Tssr12191	transcription start site region 12191	768 bp upstream
Tssr12192	transcription start site region 12192	288 bp upstream
Tssr12193	transcription start site region 12193	135 bp upstream
Tssr12194	transcription start site region 12194	34 bp downstream
Tssr12195	transcription start site region 12195	394 bp downstream
Tssr12196	transcription start site region 12196	488 bp downstream
Tssr12197	transcription start site region 12197	506 bp downstream
Tssr12198	transcription start site region 12198	522 bp downstream
Tssr12199	transcription start site region 12199	1407 bp downstream