rs46444697 SNP Detail

Summary

• ID
  rs46444697
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43212498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGTTCCCA GCATGTAGTC
  TCCTGTAGAG AGCTAGCGCT GCAAAGCAAA CGTTTAAAAG GCAAATCCTA ATCCCCGGGC
  CGTTTTATGT GAGGGCTGGG ACATGAGGCG GGTCAATGCT GCCTCTGCTG AGACCATATG
  GTCACAATAA GAGTCAGTGA TTGGCACTTG AGCAGAAGGA CCCTGTGTCC TTATTGGAGG
  W
  TGTATGTTCC TTGGGTATCA CTATTGAGTT TATTGAAGAT TCTCTGGAAA CTAGTAAATT
  GTCATCTTGG CTGCCAAAGT AATAACGTTC TGGGGAACTA GGTATGCCCA TTTTAACCCC
  GTGGTTAAAT TAATCCTGTG GTCAGTCCAC TTATCAGAGG TTACTTAAAG TCCAGAATGA
  CAGTGAATAT GTCCTGTGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61002039	NES16129054	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46444697					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61002039	NES16129054	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43212498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18937	CpG island 18937	426 bp distal
Gm44818	predicted gene 44818	1398 bp downstream
Rr645990	regulatory region 645990	808 bp distal
Rr645991	regulatory region 645991	within coordinates
Tssr66014	transcription start site region 66014	792 bp downstream
Tssr66015	transcription start site region 66015	757 bp downstream
Tssr66016	transcription start site region 66016	734 bp downstream
Zfp175	zinc finger protein 175	within coordinates