rs46445348 SNP Detail

Summary

• ID
  rs46445348
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124142255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGCCCA AACTAGGTAG
  TGATCCAAGG ACCCACCTGA CCTAACACCC TAGAAGTGGA GACCTCAAAG GTCACCTCAA
  AGGTTCCATC TCAGAAGTCA GCCCACCCCC ATCACTGACC ACGATTTCCC TCCCTGGTTC
  CACTCTAAGT ACCCAAGCAG AAGATCCAGT AGGTCCAAGT TCATAAAGAC TCAGAATTCG
  R
  CTGTTCAGCT GGGAAGTCCC AGGGAGTGAG CGTGATGAAG TCCATCACTA TTCAATAAAG
  CTTGTTTTCA ATAAGCCACC GAGAAAGCCC AACGTGCTCG CTAGGAGTCA AGCCAGCGAC
  TGCGGCGGAG GAGACGATCA GATTCTTTTT CAAGGTGAAT GGATTTCTCA GGACAAGCCT
  CCCTCTTCCT AATATGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835806	NES16016882	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46445348					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835806	NES16016882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124142255 () rs orientation: forward

Symbol	Name	Function Class
Gm37939	predicted gene, 37939	456 bp upstream
Hip1r	huntingtin interacting protein 1 related	992 bp downstream
Rr620320	regulatory region 620320	536 bp distal
Rr620321	regulatory region 620321	37 bp proximal
Rr620322	regulatory region 620322	1449 bp proximal
Tssr48832	transcription start site region 48832	796 bp upstream
Tssr53284	transcription start site region 53284	1425 bp downstream
Tssr53285	transcription start site region 53285	1923 bp downstream
Vps37b	vacuolar protein sorting 37B	449 bp downstream