rs46446028 SNP Detail

Summary

• ID
  rs46446028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180769073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAG TGGGAAGGGA CAGAGAACCA
  R
  AGAGGAAAGA GACACCCTGT TTCAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146388050	ENSMUSSNP6036903	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320160464	CHEV_1_182871639	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46446028					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180769073 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1127	CpG island 1127	303 bp proximal
Cpgi1128	CpG island 1128	1873 bp proximal
Rr424643	regulatory region 424643	1928 bp distal
Rr424644	regulatory region 424644	457 bp distal
Rr424645	regulatory region 424645	104 bp distal
Rr424646	regulatory region 424646	461 bp proximal
Rr424647	regulatory region 424647	962 bp proximal
Tmem63a	transmembrane protein 63a	836 bp upstream
Tssr10503	transcription start site region 10503	817 bp upstream
Tssr10504	transcription start site region 10504	851 bp upstream
Tssr10505	transcription start site region 10505	926 bp upstream
Tssr10506	transcription start site region 10506	944 bp upstream
Tssr10507	transcription start site region 10507	992 bp upstream