rs46447770 SNP Detail

Summary

• ID
  rs46447770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30734488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGAAAAGG ACAACAGAGG AAGAGACGTG CACTCTAGGA
  ACAGCGCCCC CTGCTGCAAC CAGAACAACC GCCCAGCTGG ATGCAACCAG CAGGCTAGGC
  Y
  GAGAATCATC CCTGGGGTGG TTTGTAGGGG TGCTGAGTTT GCACAGCTTT GCCCAGGGGG
  TTTCAAGACC CTGATCCTCA GTCACCATGC AGCCCAGCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60989543	NES16136170	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C	T	C	C		C	C	T	C		C
ss148696796	ENSMUSSNP2281224	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss322138579	CHEV_7_31820082	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46447770					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60989543	NES16136170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30734488 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	1780 bp upstream
Gm71772	predicted gene, 71772	1926 bp upstream
Rr644978	regulatory region 644978	705 bp distal
Rr644979	regulatory region 644979	within coordinates
Rr644980	regulatory region 644980	39 bp distal
Rr644981	regulatory region 644981	1836 bp proximal
Rr644982	regulatory region 644982	1937 bp proximal
Tssr2191	transcription start site region 2191	397 bp downstream
Tssr65830	transcription start site region 65830	165 bp upstream
Tssr65831	transcription start site region 65831	1925 bp upstream
Tssr71891	transcription start site region 71891	1394 bp downstream
Tssr71892	transcription start site region 71892	1955 bp downstream