rs46448295 SNP Detail

Summary

• ID
  rs46448295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4563818 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCAAA ATACAGAGAC ATACTGAGAC
  R
  GGGCAGAGAT GCGCCTTCTT ACCCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52131394	NES15248699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs46448295					SNP	G	G	G	G	G	A	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52131394	NES15248699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4563818 () rs orientation: reverse

Symbol	Name	Function Class
Esr1	estrogen receptor 1 (alpha)	within coordinates
Rr368918	regulatory region 368918	1265 bp downstream
Rr426997	regulatory region 426997	1787 bp distal
Rr426998	regulatory region 426998	742 bp distal
Tssr92264	transcription start site region 92264	1995 bp downstream
Tssr92265	transcription start site region 92265	1955 bp downstream
Tssr92266	transcription start site region 92266	1938 bp downstream
Tssr92267	transcription start site region 92267	1860 bp downstream
Tssr92268	transcription start site region 92268	1803 bp downstream
Tssr92269	transcription start site region 92269	1751 bp downstream