rs46449564 SNP Detail

Summary

• ID
  rs46449564
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103204410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCTGTC TCCTGCACCT
  GTGCAAACTG GGGTTCTGGT GGTGGGAGTC CGAAGCGGCA CTTGTGGGGA GAAGCACGTG
  GTTCGAAACG TGCCGCCATC CTTCGTAACC TAGGTGGAAA CTGCCTAGTG CATCCGTGGA
  GACCGGCTGC TTTCCAAATC AAGTTGGGGG TTTGAAGGGC GGGGTTCAAC CGGGCAAGTC
  Y
  GAGAGGAAAG TTGCTTTCAG GGCAGAGATG CGCTCCTGGG GAAAAATTGG GTTACAATAT
  TCCTACGAGT GGGCGGTGAG GCTGGAGGAC AGCCAGCCTT CCTTCTTGAG GGCTTGTGAA
  TCATTTGCAA CAGCAACACA GACTATCAAG GCAGTGTATT CACGTGACCC GGATTTGATT
  CTCTCCCGCT TGAGACATCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52209755	NES15330452	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46449564					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52209755	NES15330452	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103204410 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	within coordinates
Cpgi2165	CpG island 2165	within coordinates
Gm66970	predicted gene, 66970	within coordinates
Rr385217	regulatory region 385217	within coordinates
Rr438423	regulatory region 438423	696 bp distal
Rr438424	regulatory region 438424	86 bp distal
Rr438425	regulatory region 438425	within coordinates
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95604	transcription start site region 95604	880 bp downstream
Tssr95605	transcription start site region 95605	802 bp downstream
Tssr95606	transcription start site region 95606	713 bp downstream
Tssr95607	transcription start site region 95607	778 bp upstream
Tssr95608	transcription start site region 95608	827 bp upstream
Tssr99159	transcription start site region 99159	513 bp downstream