rs46449596 SNP Detail

Summary

• ID
  rs46449596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58418954 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGTGTTTTT GTACACTGTG
  CAGTTTACCC TGCGTTATTT AAATGAAATG CTGATTTCTC TGCCCTCATG TCTTGTTTCA
  ATCAAGACAC AGCATTGCAA TACTTATTCC AAGAATTCCT GTCTAAAGTT TGTGTAAACA
  GCTTTTACCA TTGTCAATAA ATACTGACCA CCCAATGGCT GGACAGAGTA GACAACAGGG
  Y
  AGGAAGTACA TCAACCAGAG GAAGGAGAGG GGATAAAGAG ATGCAGATCA GCCCAAGGAG
  GATGGAGGAT TCAAAGCCAT AAGGAAGGGG TCTGGAGAGA GATCATGGAA ACATACCCGA
  AGCCCAAAAA GCCACATCAG TAATATTATG CATGTATCAT GGGATGGGGT TGGGAGGTAG
  CCAGATTAGC ATAAAAGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss149066391	ENSMUSSNP5178666	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss324353129	CHEV_13_58372501	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46449596					SNP	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58418954 () rs orientation: forward

Symbol	Name	Function Class
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	within coordinates
Rr281488	regulatory region 281488	1846 bp proximal
Rr388493	regulatory region 388493	within coordinates
Tssr122822	transcription start site region 122822	781 bp downstream