rs46449980 SNP Detail

Summary

• ID
  rs46449980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:13438234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAGCACC TGTTCAGCAT
  CTCATTTAAT CACTACGTCA AACCTCAAGT CCAGTTACAC AGCACGGAGG GTTTAAGTAG
  TGCTCTCTAG CGTAGTATTT ACACTACAGT TTAAGTGATT AGTATTAGTG GTTGAGATGT
  TTGGTTCAGG CTGGGTGCCC ATTCTCTTGG AAATGTATGT CCTTAGTCGT GCTTTTATTT
  R
  TCCCAAGTAA TGAACACTGT ATGGAGTCCC CGTATGTCGT TGTAACTGTG TATGTCCCCG
  TATGACGTTG TAACTCCCCA CTGTGGAGAC ACATAACCCA CATCCAGTCA TGGCTGACGC
  TCACTTCACG TTCCTCCCTT CATCAGTGCA TCCCTGGGTA CCGAGCTGAG GAGGCTGTGG
  AGCTCCTAAA GACCTTCTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52145415	NES15236881	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs46449980					SNP	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52145415	NES15236881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:13438234 () rs orientation: forward

Symbol	Name	Function Class
Adat2	adenosine deaminase, tRNA-specific 2	within coordinates
Gm66583	predicted gene, 66583	356 bp upstream
Rr427807	regulatory region 427807	1745 bp proximal