rs46450719 SNP Detail

Summary

• ID
  rs46450719
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:52141567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTTTTTGTTT TTGTTTTTGT TTTTTTGGTG AGGTCATTCT
  AAATGAAGCA AAATGACATA GTTCAGGCAG CTTTCTGAGA GCCCCCTCGT CCATCCTTGA
  W
  TTCCCTAGAA TTCTCCAATT TTTTCAACTT TTTTTTTATA ATTCAAAATA CCATGCCAAA
  GGCATAAGGA CATAAACAAA TATGAACTAA TTTTCATTTG G                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145757480	ENSMUSSNP2186007	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs46450719					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:52141567 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9312	CpG island 9312	908 bp distal
Gm6934	predicted gene 6934	within coordinates
Rr370288	regulatory region 370288	1147 bp downstream
Rr528751	regulatory region 528751	1878 bp distal
Rr528752	regulatory region 528752	1377 bp distal
Rr528753	regulatory region 528753	1557 bp distal
Rr528754	regulatory region 528754	759 bp distal
Satb1	special AT-rich sequence binding protein 1	1249 bp upstream
Tssr145166	transcription start site region 145166	1762 bp downstream
Tssr145167	transcription start site region 145167	1739 bp downstream
Tssr145168	transcription start site region 145168	1714 bp downstream
Tssr145169	transcription start site region 145169	1522 bp downstream
Tssr145170	transcription start site region 145170	1502 bp downstream
Tssr145171	transcription start site region 145171	1278 bp downstream
Tssr145172	transcription start site region 145172	68 bp downstream
Tssr148680	transcription start site region 148680	1906 bp upstream
Tssr148681	transcription start site region 148681	1885 bp upstream
Tssr148682	transcription start site region 148682	1861 bp upstream
Tssr148683	transcription start site region 148683	1842 bp upstream
Tssr148684	transcription start site region 148684	1436 bp upstream
Tssr148685	transcription start site region 148685	1401 bp upstream
Tssr148686	transcription start site region 148686	1293 bp upstream
Tssr148687	transcription start site region 148687	1269 bp upstream
Tssr148688	transcription start site region 148688	1240 bp upstream