rs46451469 SNP Detail

Summary

• ID
  rs46451469
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165066509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGGTGTGC ATGTGCGTGT GCATGTGTGT GTGTTTCCAG
  AGGCAATGTA TTATGGAAAA AAAAAAAAAA AGACCCACCC CGAACAAGGA CAGCACCATC
  M
  AATGAGATGT TGGTCTACAT GGAATTTGAA AAGGTAGGAG AAAGAAGTCT GTTAGCACAG
  TTGTCCCATT TCCCAGCTTT CTCTCTGCTT TGAAGCAAA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145997586	ENSMUSSNP1657783	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs46451469					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165066509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi949	CpG island 949	1531 bp distal
Rr372385	regulatory region 372385	942 bp downstream
Rr422345	regulatory region 422345	1507 bp distal
Rr422346	regulatory region 422346	1980 bp distal
Tiprl	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	1944 bp upstream
Tssr14765	transcription start site region 14765	1984 bp upstream
Tssr14766	transcription start site region 14766	1949 bp upstream