rs46456624 SNP Detail

Summary

• ID
  rs46456624
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122522365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTTGTAGGG TTGGAGTGCT TTCCGGAGTC ACTGGGAGGG
  CTGCTGTGAG GGAGATAGGT TCTGGGTCCT CTCCACCAAG AGTTGCTTAA GGAGAAAAGT
  R
  AGGTGGGGCT GTCCCTGTAC TACTAAGAAC GAAGAAAAAC AATCACGTTA ACTTTTTCCC
  ACACTTTCTA GTGAAGCTCC TGCCTCTTGC CTTCTGGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135748495	ENSMUSSNP923301	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320914165	CHEV_3_122431634	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46456624					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122522365 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	76 bp proximal
Pde5a	phosphodiesterase 5A, cGMP-specific	457 bp upstream
Tssr31509	transcription start site region 31509	228 bp upstream
Tssr31510	transcription start site region 31510	288 bp upstream
Tssr31511	transcription start site region 31511	403 bp upstream
Tssr31512	transcription start site region 31512	447 bp upstream
Tssr31513	transcription start site region 31513	482 bp upstream
Tssr31514	transcription start site region 31514	993 bp upstream
Tssr31515	transcription start site region 31515	1134 bp upstream
Tssr31516	transcription start site region 31516	1154 bp upstream
Tssr31517	transcription start site region 31517	1202 bp upstream
Tssr31518	transcription start site region 31518	1331 bp upstream
Tssr31519	transcription start site region 31519	1397 bp upstream
Tssr31520	transcription start site region 31520	1420 bp upstream
Tssr31521	transcription start site region 31521	1500 bp upstream
Tssr31522	transcription start site region 31522	1536 bp upstream