rs46458388 SNP Detail

Summary

• ID
  rs46458388
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:31765501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACACACA GCAGTGTACC
  AGCTCCATAA CATGATGGCT CAGGACACAT CTTCACATGT ATGGTGTGAT CTGTCTATCA
  TGGGGATACC TATTTACAGG CTATGTCTCA TCCCAGTCAT GTGGCAATGT AGGCACACCT
  TTTCCACACT GGTGCTATCA CGTGGTGATG TTCACATACA TGCCGTTTCA TACACCATCC
  Y
  TTGACAATGT AGGCACAACT GTTTGCACAC ATGCCATGAC GTCCTAGCAC CACTCGGTGG
  TGTGTGCACA CCTGTTCACA TGCATGTGGT TTCCCAGTGC CATCCTGTGA CAGCATGGGC
  ATGTGTTAAC ACACACCTGT GACCACTGGC CATTCCATGG CACGTGGCTG TGCAGACCTG
  TTCATACAAG TACCATGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63012838	NES17430125	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46458388					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63012838	NES17430125	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:31765501 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9789	CpG island 9789	1389 bp proximal
Gm58914	predicted gene, 58914	within coordinates
Rr405571	regulatory region 405571	1695 bp upstream
Rr535275	regulatory region 535275	within coordinates
Rr535276	regulatory region 535276	46 bp proximal
Rr535277	regulatory region 535277	94 bp proximal
Rr535278	regulatory region 535278	635 bp proximal
Rr535279	regulatory region 535279	1743 bp proximal
Rr535280	regulatory region 535280	1946 bp proximal
Sap130	Sin3A associated protein	1935 bp upstream
Tssr150348	transcription start site region 150348	1868 bp upstream
Tssr150349	transcription start site region 150349	1920 bp upstream
Tssr150350	transcription start site region 150350	1926 bp upstream