rs46458436 SNP Detail

Summary

• ID
  rs46458436
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACT AGCTAAGCCA TCTTGCCAGT
  Y
  CTTGTTTGTA TTTATCTACT AGCTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136425017	ENSMUSSNP2411936	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss322944010	CHEV_9_46039684	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46458436					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142899 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	1132 bp downstream
Apoc3	apolipoprotein C-III	1449 bp downstream
Cpgi21701	CpG island 21701	1096 bp distal
D9Mit93	DNA segment, Chr 9, Massachusetts Institute of Technology 93	1754 bp proximal
Rr195183	regulatory region 195183	1899 bp distal
Rr206362	regulatory region 206362	498 bp distal
Rr206363	regulatory region 206363	1901 bp proximal
Tssr84847	transcription start site region 84847	1693 bp downstream
Tssr84848	transcription start site region 84848	1615 bp downstream
Tssr84849	transcription start site region 84849	1579 bp downstream
Tssr84850	transcription start site region 84850	1537 bp downstream
Tssr84851	transcription start site region 84851	1502 bp downstream
Tssr84852	transcription start site region 84852	1405 bp downstream
Tssr84853	transcription start site region 84853	1371 bp downstream
Tssr84854	transcription start site region 84854	1358 bp downstream
Tssr84855	transcription start site region 84855	1338 bp downstream
Tssr84856	transcription start site region 84856	1327 bp downstream
Tssr84857	transcription start site region 84857	1205 bp downstream
Tssr84858	transcription start site region 84858	1168 bp downstream
Tssr84859	transcription start site region 84859	1531 bp upstream
Tssr84860	transcription start site region 84860	1670 bp upstream
Tssr84861	transcription start site region 84861	1716 bp upstream
Tssr89313	transcription start site region 89313	1626 bp upstream
Tssr89314	transcription start site region 89314	1598 bp upstream
Tssr89315	transcription start site region 89315	1575 bp upstream
Tssr89316	transcription start site region 89316	1555 bp upstream
Tssr89317	transcription start site region 89317	1546 bp upstream
Tssr89318	transcription start site region 89318	1522 bp upstream
Tssr89319	transcription start site region 89319	1512 bp upstream
Tssr89320	transcription start site region 89320	1499 bp upstream
Tssr89321	transcription start site region 89321	1474 bp upstream
Tssr89322	transcription start site region 89322	1391 bp upstream
Tssr89323	transcription start site region 89323	1339 bp upstream
Tssr89324	transcription start site region 89324	1311 bp upstream
Tssr89325	transcription start site region 89325	1286 bp upstream
Tssr89326	transcription start site region 89326	1252 bp upstream
Tssr89327	transcription start site region 89327	1138 bp upstream
Tssr89328	transcription start site region 89328	1498 bp downstream
Tssr89329	transcription start site region 89329	1569 bp downstream
Tssr89330	transcription start site region 89330	1615 bp downstream
Tssr89331	transcription start site region 89331	1648 bp downstream
Tssr89332	transcription start site region 89332	1723 bp downstream