rs46458766 SNP Detail

Summary

• ID
  rs46458766
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64606770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTCTTA CGGGGGAATA
  TATCAGCAGC CATCTTCTTT TTAGTCTTCA AGATAATTAT TTCATAACAA ATTGGGGGCA
  ACTTGCTGCT CCCACTGCCA CCGCTGCTGC CGCCACCGCC GCCACCGCTG CTGTTGGCTT
  TCTATGAACC ATTTTTGGAC CTGTTCTTAC TGTTTCGTCA GCCTTCTGCG TGGCCACGGA
  Y
  GCTACCGCCG TTCGCAGCTC CGACCAGGTG CCCGCTCCGC AGGCCCCGTC CGGGAACTCA
  GGGATCCAAA GCCCGGCGGG CGATGGGCAC TCGCCATAAT GCTATTTTCA TAGAAATACT
  TGAACTAGAC ATTACCTATA AATACTTAAG CTCTTTAATA CACTTGCTGG ACGAACTGCC
  TGCATGCCAC CATGCTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61830027	NES17756929	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46458766					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61830027	NES17756929	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64606770 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5782	CpG island 5782	1084 bp distal
Cpgi5783	CpG island 5783	within coordinates
Gm7712	predicted gene 7712	168 bp upstream
Gm31218	predicted gene, 31218	within coordinates
Gm59386	predicted gene, 59386	1528 bp upstream
Rr481886	regulatory region 481886	1539 bp distal
Rr481887	regulatory region 481887	1038 bp distal
Rr481888	regulatory region 481888	131 bp distal
Rr481889	regulatory region 481889	1928 bp proximal