rs46460072 SNP Detail

Summary

• ID
  rs46460072
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98940804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTTTTGC TGACATTTCA
  GCCTGCCATT CATCCCATCA TTCCAGACAC CTTGCTTATG GAGTTAGTCA ACGCTGTGCA
  GGTTCCTCCC CTACTGCTCG AGTCAACATC TGTCAGAACT GGACATGTCT GCTTGAGGCG
  AGGTGAGGAA ATCTCCCGCC TTATGCAACT GGATTCTCTT CTTTAAAAGA TTATTTTATG
  Y
  GTATATGTGT GTGGGGGATG GGTCTGTACA CATGCCCATG GAGGCCAGAA AGGGCATAGG
  ATCTCCTGGA GCTGGAGTCA CCAGTGGTGT GAGCCACCCT GTCTGCGTGC TAGGAACGGA
  ACTCAGGTCT TCTAGAAGGC CTTGGACCAG TTCTGACCAC AGAGTCATCT CTTTGGCCCT
  TGGGTACATC TCTTTAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148463647	ENSMUSSNP2470174	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325079665	CHEV_15_98873354	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46460072					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98940804 () rs orientation: forward

Symbol	Name	Function Class
Gm41399	predicted gene, 41399	within coordinates
Gm62755	predicted gene, 62755	24 bp upstream
Rr509292	regulatory region 509292	1625 bp distal
Rr509293	regulatory region 509293	206 bp distal
Rr509294	regulatory region 509294	1275 bp proximal
Rr509295	regulatory region 509295	1467 bp proximal
Rr509296	regulatory region 509296	1841 bp proximal