rs46460224 SNP Detail

Summary

• ID
  rs46460224
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67145978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAAGAGC ATCAAATAAT
  TTCACAGCTT CCATATCTAT ACAGTTAAGA GGACCATGTA CTCAGTCTAG GATCCCACTA
  GACCCTAGTG AAGAAATGCA TCGTTTCCCC TCCCCCTTCT CTCTGGTTTC ATAGATATGT
  TTGAAATAGA CACTTCAGAT GGAAAAGAGC TCCCCTGGGA AATCAGAATT CTGGGAGAGA
  Y
  AAAATGGTCA CTAAGAAGTA ATTCTGGAAA AACCTATGGG CACAGAGAAA TAAGAGATCT
  TAGGGGAAAA CAGACTTCCC TAATCAGCGG ATAGGTAGAG TTCCTTCTGT TAACTTTGAG
  TCTTCTCGCA CTGACCGCCA CCCCAGGAAG AAGCTGGCTC AGCGTCTGCA GGATGCTGAG
  GAACATGTAG AAGCTGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132326627	ENSMUSSNP5740904	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323719235	CHEV_11_67068654	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46460224					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67145978 () rs orientation: forward

Symbol	Name	Function Class
Myh4	myosin, heavy polypeptide 4, skeletal muscle	within coordinates
Tssr3528	transcription start site region 3528	409 bp downstream
Tssr3529	transcription start site region 3529	353 bp downstream
Tssr102201	transcription start site region 102201	1634 bp downstream
Tssr102202	transcription start site region 102202	1145 bp downstream
Tssr102203	transcription start site region 102203	1082 bp downstream
Tssr102204	transcription start site region 102204	686 bp downstream
Tssr102205	transcription start site region 102205	469 bp downstream
Tssr102206	transcription start site region 102206	365 bp downstream
Tssr102207	transcription start site region 102207	269 bp upstream
Tssr102208	transcription start site region 102208	439 bp upstream
Tssr102209	transcription start site region 102209	474 bp upstream
Tssr102210	transcription start site region 102210	492 bp upstream
Tssr102211	transcription start site region 102211	502 bp upstream
Tssr102212	transcription start site region 102212	524 bp upstream
Tssr102213	transcription start site region 102213	676 bp upstream
Tssr102214	transcription start site region 102214	1032 bp upstream
Tssr102215	transcription start site region 102215	1046 bp upstream
Tssr102216	transcription start site region 102216	1090 bp upstream
Tssr102217	transcription start site region 102217	1244 bp upstream
Tssr102218	transcription start site region 102218	1955 bp upstream
Tssr108536	transcription start site region 108536	1098 bp upstream
Tssr108537	transcription start site region 108537	1077 bp upstream
Tssr108538	transcription start site region 108538	567 bp upstream
Tssr108539	transcription start site region 108539	369 bp upstream
Tssr108540	transcription start site region 108540	311 bp upstream
Tssr108541	transcription start site region 108541	283 bp downstream
Tssr108542	transcription start site region 108542	444 bp downstream
Tssr108543	transcription start site region 108543	559 bp downstream
Tssr108544	transcription start site region 108544	1142 bp downstream