rs46461349 SNP Detail

Summary

• ID
  rs46461349
• Variation Type
  SNP
• Alleles
  A/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:144177842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCTTCC TTCCTTCCTT
  CCTTCCTTCC TTCCTTCCTT CCTTCCTTCC TTTTCTTTTT CTTTAAGATT TCTTTATGTG
  AGCACACTGT TGCTCTCTTC AGACACACCA GGAGAGGTCA CCAGATCCCA TTACAGATGG
  TTGTGAGCCA CCATGTGGTT ACTGGGAATT GAACTCAGGA CCTCTGGAGG AGCAGTCAGT
  D
  CTCTTAACCA CTGAGCCATC TCTCCAGCCC TCAGCCTGCT TTCTTACACA ACCCAGGACC
  ACCTGTCCAG GAATGACACT GCCCACAGGG GCCCTTCCCC GGCAAAAATT AACCAAGACA
  TGTACCCTAC AGATCTGCCT ACTGGCCAAT CATATGAAAA CTTTTTTTGA GACAGGATTT
  CTCTTTGTAG CCTTGGCTAT                                            
  
  D = A/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144609015	ENSMUSSNP5111328	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T
ss148845654	ENSMUSSNP5439747	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	T
ss321709565	CHEV_5_145001901	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs46461349					SNP	A	?	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:144177842 () rs orientation: forward

Symbol	Name	Function Class
2900089D17Rik	RIKEN cDNA 2900089D17 gene	749 bp downstream