rs46461421 SNP Detail

Summary

• ID
  rs46461421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74858964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAG TTTGTAGAGG ACCTGTATTC
  Y
  GTCCCCAGCT TACAACTCTA GTGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136638877	ENSMUSSNP4210377	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323007470	CHEV_9_74799489	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46461421					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74858964 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	1198 bp upstream
Cpgi22037	CpG island 22037	802 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	710 bp distal
Gm68252	predicted gene, 68252	105 bp downstream
Rr401515	regulatory region 401515	154 bp upstream
Rr401516	regulatory region 401516	1047 bp upstream
Rr683033	regulatory region 683033	within coordinates
Rr683034	regulatory region 683034	33 bp proximal
Rr683035	regulatory region 683035	403 bp proximal
Rr683036	regulatory region 683036	1125 bp proximal
Rr683037	regulatory region 683037	1416 bp proximal
Tssr86114	transcription start site region 86114	1170 bp upstream
Tssr86115	transcription start site region 86115	1392 bp upstream
Tssr86116	transcription start site region 86116	1474 bp upstream
Tssr86117	transcription start site region 86117	1879 bp upstream