rs46461697 SNP Detail

Summary

• ID
  rs46461697
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172188969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCTAAC CCTAACCCTA
  ACCTTAAACA CACACTCTGC CTTGACAGGT GTGTTTACAG CAAGGATAAG TCTGGTCTCA
  GGCTCATAGG ATCCATGTCT CTGCTTGCTA AGTCAATCAC TTTGATCAAA CGCTATCCCT
  TTTCCATGTC TGTAAAATGA GATGTTACTA AGTCATTTCC CAGAGGGTGA ATGTGATAGG
  Y
  GACAGCATGC TAGCTGGCAT CTGGTACATC ATGGCTGACA CCAGTGATTT CTGTCATCCG
  TGTCACACCG CCCAGGGCCT CCAGAGCCCA GGAGCTGAGC TTGTACTTCA AAAAGGATAC
  TCCTCAAGAA GCCAACTGTG GGGGAGGGAC CTGCCCTGGG ACTCAGTCCG GCATTCCCAC
  TCCACCTCCA ACCTGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148314042	ENSMUSSNP2213102	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320618220	CHEV_2_172172549	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46461697					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172188969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	666 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21944	transcription start site region 21944	1459 bp downstream
Tssr21945	transcription start site region 21945	1423 bp downstream
Tssr21946	transcription start site region 21946	1402 bp downstream
Tssr27939	transcription start site region 27939	1366 bp upstream