rs46462795 SNP Detail

Summary

• ID
  rs46462795
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45014942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGCAAGA TGGACTTCCT
  TGTCACAGGG CTTTGAAGTG GAGTTATAAA TAGGAGCTGA GAGATTAGTT CATTTCCCTG
  AGCTCCAATA GTTTCCCCCT CCCTCCCCCC TCCTTTTCTC CTTCCCCCTC TCCACATTTT
  AACTTTTAGA CACTTCTCTT TGGTCCGTTG GCTTCTTGAG TTTTGGGTTG CCTTTGTCCC
  W
  AAGGTAGGAG TCTTCTTTAA CAAGGTTCAA CCCTTAGAAG CCTGAGATCG TGTCTTTTCC
  CCCTAAGAGC GACAGGATGG GGAATCACAG TCCTTAGCCC TCACAGCCGT GAGGCTCAAG
  GAGGGCCGTT CTTGCCATAT CAACTCTCTG AGAGACGATA ACAGCCAGCT GATAATGAAT
  ATTAACTTGC CGTGACTAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61388967	NES16766748	PERLEGEN	MM_PANEL2	f	SNP	T	A	A	A	T	A	T	A	A	T	A	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46462795					SNP	T	A	A	A	T	A	T	A	A	T	A	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388967	NES16766748	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45014942 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	within coordinates
Tssr84725	transcription start site region 84725	760 bp downstream
Tssr84726	transcription start site region 84726	192 bp upstream
Tssr84727	transcription start site region 84727	222 bp upstream
Tssr84728	transcription start site region 84728	250 bp upstream