rs46463800 SNP Detail

Summary

• ID
  rs46463800
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55204880 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTAGTCTC TGTTGCCCAC
  ATCTCTAGAC AGGTGTCCTC CAAAGACCTT GCTACCTTGG CTTAGGGACA CATATAGAGT
  GTCCATTCTA TTTTCCATGG TCCCTGAGAT GCAGGCCATC ATCCAATCTC TTTAAACCAT
  GGAAGGGATT CACCCACTTT GCCTTGGGCA ATTTACACAC AAACCTGCAG TCTGGTAACC
  W
  CACGCACAGA ACTGAACAGC TGCACAGCCA TGCCCGTTTT CAGTCAGACA CACACACATG
  CACACAGACT TTACACATTA ACCCAGTTAA GCCTGCAGAT TTCCTTTCTT GCCTCTACAC
  ATACTGATCC ATATATCGTG CACCATGATG TTTGGACATG TAGGTTTTTA CCCTCCCTCT
  GCAACCCTCC ACTCCTGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52723019	NES15567933	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46463800					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52723019	NES15567933	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55204880 () rs orientation: forward

Symbol	Name	Function Class
Mhrt	myosin heavy chain associated RNA transcript	1335 bp upstream
Myh6	myosin, heavy polypeptide 6, cardiac muscle, alpha	496 bp upstream
Rr407057	regulatory region 407057	within coordinates
Rr492378	regulatory region 492378	829 bp distal
Rr492379	regulatory region 492379	292 bp distal
Rr492380	regulatory region 492380	812 bp proximal
Tssr4419	transcription start site region 4419	1121 bp upstream
Tssr4420	transcription start site region 4420	1008 bp upstream
Tssr4421	transcription start site region 4421	1002 bp upstream
Tssr4422	transcription start site region 4422	950 bp upstream
Tssr4423	transcription start site region 4423	924 bp upstream
Tssr4424	transcription start site region 4424	886 bp upstream
Tssr4425	transcription start site region 4425	773 bp upstream
Tssr125718	transcription start site region 125718	1249 bp upstream
Tssr125719	transcription start site region 125719	1328 bp upstream
Tssr125720	transcription start site region 125720	1358 bp upstream
Tssr125721	transcription start site region 125721	1378 bp upstream
Tssr125722	transcription start site region 125722	1803 bp upstream
Tssr125723	transcription start site region 125723	1872 bp upstream
Tssr125724	transcription start site region 125724	1884 bp upstream
Tssr128736	transcription start site region 128736	1989 bp upstream
Tssr128737	transcription start site region 128737	1962 bp upstream
Tssr128738	transcription start site region 128738	1950 bp upstream
Tssr128739	transcription start site region 128739	1599 bp upstream
Tssr128740	transcription start site region 128740	1529 bp upstream
Tssr128741	transcription start site region 128741	1456 bp upstream
Tssr128742	transcription start site region 128742	838 bp upstream
Tssr128743	transcription start site region 128743	815 bp upstream
Tssr128744	transcription start site region 128744	486 bp upstream
Tssr128745	transcription start site region 128745	201 bp upstream
Tssr128746	transcription start site region 128746	529 bp downstream
Tssr128747	transcription start site region 128747	558 bp downstream
Tssr128748	transcription start site region 128748	577 bp downstream
Tssr128749	transcription start site region 128749	640 bp downstream
Tssr128750	transcription start site region 128750	659 bp downstream
Tssr128751	transcription start site region 128751	676 bp downstream
Tssr128752	transcription start site region 128752	729 bp downstream
Tssr128753	transcription start site region 128753	918 bp downstream
Tssr128754	transcription start site region 128754	997 bp downstream