rs46464114 SNP Detail

Summary

• ID
  rs46464114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52648641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAACC AACTTTCTTT
  TTTTTTTTTT TTGAGACAGG GTTTCTTTGA ATAGCCCTGG TTGTCTTGGA ACCCACTCTG
  TAGACCAGTC TGGCCTCGAA CTCAGAAATT CGCCTGCCTC TGCCTCCCGA ATGCTGGTAT
  TAAAGGTGTG CGCCACCACC GCCCGGCTCT GCGTGACTTC ATAACCCTTC TTTTTCTGCA
  Y
  ATCAGAAAAC CGGTGCCAAT TAAACAAGTT TTAAAATTAT TTTCTCATGC CAAGTTGGAG
  GAAAGATGGG AGGACGAGGA GAAGGGAAAA AAAAAAAAAA GAAACTCTAG TTAAATTAAG
  TAGTAACTTG CCTTGTCCTT CGGTAGTTCG TTTGTTAATG AATTGAGACA GTTTGTATAG
  GTGTTGTACA GGACTATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss137738279	ENSMUSSNP3822018	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46464114					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52648641 () rs orientation: forward

Symbol	Name	Function Class
1700031P21Rik	RIKEN cDNA 1700031P21 gene	within coordinates
Cpgi4596	CpG island 4596	1116 bp proximal
Gm24859	predicted gene, 24859	1930 bp upstream
Rr387217	regulatory region 387217	1332 bp downstream
Rr403283	regulatory region 403283	1795 bp upstream
Rr466025	regulatory region 466025	187 bp proximal
Rr466026	regulatory region 466026	450 bp proximal
Tssr116285	transcription start site region 116285	453 bp downstream
Tssr116286	transcription start site region 116286	505 bp downstream