rs46464229 SNP Detail

Summary

• ID
  rs46464229
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30731079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTTTTAAT ATTTATTTAG TTTCGTTTTT TTAAAATTGT
  TTTTGAAACG GGGTCTCACT ATGTGTGTAG CTCTAGCTGG CCTAGAACTT GCTATATAGA
  Y
  AGGCTGGACT TAACTCACAG AGATCTTGCT GCCTTTGCAC CTCCCCTCCC CCCAGATCTG
  GGGCACCACC ACATCCCACC TACTTAGTTA TTTTTAAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148696729	ENSMUSSNP6765184	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss322138554	CHEV_7_31816673	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs46464229					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30731079 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	1074 bp downstream
Rr644976	regulatory region 644976	716 bp distal
Rr644977	regulatory region 644977	134 bp proximal
Rr644978	regulatory region 644978	1839 bp proximal
Tssr65829	transcription start site region 65829	1199 bp upstream