rs46464403 SNP Detail

Summary

• ID
  rs46464403
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48408293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT ATTTAATCAA CTCCCAACTT
  Y
  ATTAGTGTGA ATCTACTGTC ACAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61394046	NES16775879	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C		C	T		T		C	C	T		C
ss136454990	ENSMUSSNP5210610	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						C					T
ss322954393	CHEV_9_48305098	CHEVERUD	SCREENING_POP	f	SNP												C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs46464403					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61394046	NES16775879	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48408293 () rs orientation: forward

Symbol	Name	Function Class
1700121I08Rik	RIKEN cDNA 1700121I08 gene	636 bp upstream
Cpgi21716	CpG island 21716	973 bp distal
Gm5617	predicted gene 5617	1021 bp downstream
Gm70225	predicted gene, 70225	within coordinates
Rbm7	RNA binding motif protein 7	1694 bp upstream
Rr195326	regulatory region 195326	93 bp distal
Rr206379	regulatory region 206379	492 bp distal
Rr401354	regulatory region 401354	1475 bp downstream
Tssr2862	transcription start site region 2862	1095 bp upstream
Tssr84988	transcription start site region 84988	1936 bp downstream
Tssr84989	transcription start site region 84989	1878 bp downstream
Tssr84990	transcription start site region 84990	1773 bp downstream
Tssr84991	transcription start site region 84991	1727 bp downstream
Tssr84992	transcription start site region 84992	1593 bp downstream
Tssr84993	transcription start site region 84993	1542 bp downstream
Tssr84994	transcription start site region 84994	1083 bp downstream
Tssr89394	transcription start site region 89394	1720 bp upstream
Tssr89395	transcription start site region 89395	1675 bp upstream
Tssr89396	transcription start site region 89396	1658 bp upstream