rs46465490 SNP Detail

Summary

• ID
  rs46465490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:37873796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTACCTA GTGTAGACAG
  CCATCTCCTG TCTTTGCCTC TGGAGGGCTG TGAGGACAGG CAAACTGCTC TCACCCACAT
  AGCTGGGGAC CCAAACTCTC CTCCCTGTAT ACTCTTTATT TGAGAAGCCC CATAACTTGT
  GCCTTATTTA AAAAAACAAA AACAAAAAAA CAAAAAAAAA AAAAACAAAA AGCAGGAGGA
  K
  TTGCATGCAA TTACAGTAGG ATGGGACATG GATGGGAAAC AGGAGGAGGA AGGGCTTCAC
  CACCAAAGTG TTCTCCCTTT GCTCCTCTGG CTTGTTTACA TTTTTAAAAA TCAACCTGTG
  TTACTCACAA CCTGTGGTAC TTGTGTTTCC TCATTGTTTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61764388	NES17699264	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs46465490					SNP	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61764388	NES17699264	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:37873796 () rs orientation: forward

Symbol	Name	Function Class
Rr271585	regulatory region 271585	796 bp distal
Rr279067	regulatory region 279067	7 bp distal
Rr283303	regulatory region 283303	406 bp proximal