rs46466173 SNP Detail

Summary

• ID
  rs46466173
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156058695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCATACAGA GGTTAGAGCA
  GATGTGCTTC TTGCTGCTCC TGCTTAGTAT TCGGGTTGCT TTTCTCTTGG GGGTTACCAA
  AGTAGGAAAT AACTGAGAGG GAGATTATAG GATATAGAGG ATTGTGGCTT GTGCAGAGAA
  TTCTAAATTT TATCAGACAC AGGAGCCTTG CCTCACCATA AGGTCCTTCT GTGTAGAAAT
  K
  ATCCCTGGCT CCTTAGCCTT GAAGTTCAGT GCAAGGTCTG GAACCAAGAA GATAAAAGTG
  GAGTTTGTTG TCATTCTTGT TGTCTGTGCT GGCTAATTTT ATGTCAGCGT GACACAGGCT
  AGAGTCATCT GAAAGGAGGG AACCCCAACT GAGAAAGTGC CTCCATAAGA CTGGGCTGTA
  GGCAAACCTG AAAGGCATTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60330224	NES15828197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46466173					SNP	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60330224	NES15828197	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156058695 () rs orientation: forward

Symbol	Name	Function Class
Rr421146	regulatory region 421146	1771 bp distal
Rr421147	regulatory region 421147	1235 bp distal
Rr421148	regulatory region 421148	1485 bp distal
Rr421149	regulatory region 421149	1365 bp distal
Rr421150	regulatory region 421150	17 bp distal