rs46466519 SNP Detail

Summary

• ID
  rs46466519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:100307567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTCTCAG TGGGAGTCCT
  TCCTTTATCT GCTCTCCATA AGCAACTTGG TCCAAACTGA ACCCACCCAC TTCCCACATA
  GGAGCAAAAC CACACTTGAA AGAGAAGAAC ACAGGGGCTA GAGAGATGGC TCAGCGGCTG
  AGAGCGCCAA CTGCTCTTCC AGAGGTCCTG AGTTCAATTC CCAGCAACCA CATGGTGACT
  Y
  ACAACCATCT GTAATGAGAT CTGACGCCCT CTTCTGAAGA CAGCTACAGT GTACTTATTT
  ATAATAATAA ATCAATCTTT GGGCTGCAGC GAGTGGGGTT GACTGGAGCA AGCAGAGGTC
  CTAAATTCAA TTCCCAACAA GCAGATGAAG ACCCACAACC ATCTGTACAG CTACAGTGTG
  TGCTCATATA CACTAAATAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148475121	ENSMUSSNP3868818	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs46466519					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100307567 () rs orientation: forward

Symbol	Name	Function Class
Rr509705	regulatory region 509705	924 bp proximal
Slc11a2	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	Intron
Tssr136419	transcription start site region 136419	473 bp downstream