rs46466757 SNP Detail

Summary

• ID
  rs46466757
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65051467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACAGCT ACAGTGTACT
  CATACACATA AAATAACTTA AAAAAAAAAC AAGTACCCAT GTCCTTAACA ACCCTTGTTG
  TTGACTACTG CTCACGGCAC TGTCTTGTGC TTTGCAAGAT GAAATGAAGG TTTAGAGCCT
  CAAAACTCGC TGATAAACTT TATCCTCCTG AATTTATTCA AAATGATTGT GCGCTTTTGT
  R
  AACGAGACTG CAAAAGGCTA ATGGCTTTTG AAAGTGTCCT GTTACATCTA TTTGCTGTTT
  TCAAACGGTT TAAGTTTGAA GACTTTGTCT TAAATGCATT ATTTACCATT TAAATAGTGC
  ATCACGAATA ATGAATTTGA GATTATTTTG TGTTTTACAT GTATACTTGT GTCATTTTTG
  AGATATTTGA AAGAGAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60744926	NES16383396	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs46466757					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60744926	NES16383396	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65051467 () rs orientation: forward

Symbol	Name	Function Class
Akr1cl	aldo-keto reductase family 1, member C-like	770 bp downstream
Rr412365	regulatory region 412365	1673 bp distal
Rr412366	regulatory region 412366	1973 bp distal
Rr412367	regulatory region 412367	1919 bp distal