rs46467605 SNP Detail

Summary

• ID
  rs46467605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24558834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCTGTG GGCAGGGTCA
  CAGACAACAG CCCAGCCCCA CTGGGGAAAG AGCCCACGAG GCATTCTTAT CTCTGTGAAG
  CCTTTTGTAG GAGGCTGTAG CCTCCCCTTA GGCTGCCCGA GCTGCACCTG AAAGATGGCA
  CCTGCTGGAT GCAGAGCTGG TGGTGTAAAC AAGTCCATAT TTGGTGAAGA TGCGCCCCTG
  Y
  CGCCCTGATT GGCTGAAGCT GTGTGCCTGG TGAGGTGACG TGGCCTGCTG TGAGTGGATG
  GGGGCTGAGA GTATATAAGA GTGAGAGGCT CCGGGTTCAG GGGAGAGAGA TGAAGAGGAA
  GAGAGATGAA GACTGAAGAT TGCTGAATAA ACTGCTGATA GAAGAACTCA TTCTTGCTGG
  TCGAGGGCGG ATGCGACAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148811307	ENSMUSSNP2904409	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T		C
ss324295901	CHEV_13_24466720	CHEVERUD	SCREENING_POP	f	SNP				T		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46467605					SNP	T	T	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24558834 () rs orientation: forward

Symbol	Name	Function Class
Cmah	cytidine monophospho-N-acetylneuraminic acid hydroxylase	within coordinates
Gm11342	predicted gene 11342	within coordinates
Tssr4016	transcription start site region 4016	1199 bp upstream
Tssr118891	transcription start site region 118891	1334 bp downstream
Tssr118892	transcription start site region 118892	1183 bp upstream
Tssr118893	transcription start site region 118893	1219 bp upstream
Tssr118894	transcription start site region 118894	1283 bp upstream
Tssr118895	transcription start site region 118895	1317 bp upstream
Tssr121784	transcription start site region 121784	1091 bp downstream
Tssr121785	transcription start site region 121785	1111 bp downstream
Tssr121786	transcription start site region 121786	1171 bp downstream