rs46468095 SNP Detail

Summary

• ID
  rs46468095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94902592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTCC AGAGAAAGGT CAGAGGTCCC
  Y
  AATGGTCCTC CAGGAACTGG AAGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132651942	ENSMUSSNP3420390	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323817422	CHEV_11_94873080	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs46468095					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94902592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3571	CpG island 3571	1105 bp distal
Gm36385	predicted gene, 36385	1515 bp upstream
Gm72634	predicted gene, 72634	within coordinates
Rr250	regulatory region 250	556 bp proximal
Rr454924	regulatory region 454924	1877 bp distal
Rr454925	regulatory region 454925	1526 bp distal
Rr454926	regulatory region 454926	1025 bp distal
Rr454927	regulatory region 454927	within coordinates
Rr454928	regulatory region 454928	122 bp proximal
Samd14	sterile alpha motif domain containing 14	within coordinates
Tssr104328	transcription start site region 104328	1984 bp downstream
Tssr104329	transcription start site region 104329	1876 bp downstream
Tssr104330	transcription start site region 104330	1847 bp downstream
Tssr104331	transcription start site region 104331	1819 bp downstream
Tssr104332	transcription start site region 104332	1803 bp downstream
Tssr104333	transcription start site region 104333	1737 bp downstream
Tssr104334	transcription start site region 104334	1680 bp downstream
Tssr104335	transcription start site region 104335	1651 bp downstream
Tssr104336	transcription start site region 104336	1581 bp downstream
Tssr104337	transcription start site region 104337	1490 bp downstream
Tssr104338	transcription start site region 104338	1473 bp downstream
Tssr104339	transcription start site region 104339	1401 bp downstream
Tssr104340	transcription start site region 104340	1387 bp downstream
Tssr104341	transcription start site region 104341	1347 bp downstream
Tssr104342	transcription start site region 104342	1283 bp downstream
Tssr110238	transcription start site region 110238	1441 bp upstream
Tssr110239	transcription start site region 110239	426 bp downstream