rs46469277 SNP Detail

Summary

• ID
  rs46469277
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134126868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACATATT CCCAACACAG
  ACACAACATA TACACACAGA GACACAGAAA CACAAATAAA AATAAAAACA AATTTTTAGA
  GTAAATAAAA GTTAGTGTAG CTCAATGGTT AAGAGCATTG GCTGCTCTTC CAGAGGATCT
  GGGGTAAAAT TCCCAGCACT CACAGAGTAG CTCATAATCA CCTGTAACTA ACTCCAGTTC
  M
  AGAGGGTCTG ACACTGTCTT CTGAGTGCCC TGGGCACCAA GCATGCTTGT GACACACACA
  TTCATACATA CATACATACA TGCATACATA CATACAGGGA AAACACCTAT ATACACAAAA
  TTATGGGGTT TTTTTCTATT AAGTTTTTAG TTAAAAGTAA AGAAAAAGAA GGCTGGGAGT
  ACTTGAGTGT TAAGACTGTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss144500628	ENSMUSSNP5804962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs46469277					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134126868 () rs orientation: forward

Symbol	Name	Function Class
Castor2	cytosolic arginine sensor for mTORC1 subunit 2	1719 bp upstream
Cpgi16713	CpG island 16713	1091 bp proximal
Gm15627	predicted gene 15627	383 bp downstream
Rr621932	regulatory region 621932	637 bp proximal
Rr621933	regulatory region 621933	1158 bp proximal
Tssr49079	transcription start site region 49079	1663 bp upstream
Tssr49080	transcription start site region 49080	1675 bp upstream
Tssr49081	transcription start site region 49081	1738 bp upstream