rs46470420 SNP Detail

Summary

• ID
  rs46470420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27582516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGCCGGT AGCCTAGCTG
  CCCAGGTCCT GCAGGAAGCT AGGACAGCGG AACCTGTGTC ACTTCCTGGA AACGCAAAAA
  TCTGACACAG TTGATAACCA GTCACATCAT ATGCAAAAAT TAGCTCTTAA GTCAGGCAGG
  GATACAGCTT GGTTGTAGAG CACTTGTTAA ACCCAAGTAA GGCCCCAGGT TCAATCCTCA
  S
  TACTGATTAA AGGGAGGAAG AAAAAAATTA AAGACATATG TAAGAGCCAA AATTAGAAAA
  GTATAGTCAC CATGATGTCT GCTCTTGTTC CTCCTGAAGG TCCCTCAAAG GTCAATGTGT
  TAAAATGCTT GTTCCCAGCT TGCCTCTAGT CTCAGTGTTG TTAAGAGAGA GGAGCCTGGA
  GGGCTCCTTT GAGTCATTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss145411797	ENSMUSSNP5464685	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		C
ss325346730	CHEV_17_27500487	CHEVERUD	SCREENING_POP	f	SNP			C		G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs46470420					SNP	G	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27582516 () rs orientation: forward

Symbol	Name	Function Class
Gm49794	predicted gene, 49794	within coordinates
Rr334543	regulatory region 334543	116 bp distal
Rr337133	regulatory region 337133	1669 bp distal
Tssr147021	transcription start site region 147021	928 bp downstream